Package index • phiperio

All functions

add_exist(): Ensure an existence flag (all ones) on data_long
close(<phip_data>): Close phip_data connections
convert_legacy(): Convert legacy Carlos-style input to a modern phip_data object
convert_standard(): Convert raw PhIP-Seq output into a phip_data object
create_data(): Construct a phip_data object
expand_data(): Expand to a full sample_id * peptide_id grid
export_parquet(): Export a phip_data Table to Parquet
get_counts(): Retrieve the main PhIP-Seq counts table
get_example_path(): Path to example PhIP-Seq datasets shipped with phiperio
get_meta(): Retrieve the metadata list
get_peptide_library(): Retrieve the peptide metadata table into DuckDB, forcing atomic types
load_example_data(): Load Example PhIP-Seq Dataset as <phip_data>
merge(<phip_data>): Merge or join a phip_data object
left_join(<phip_data>) right_join(<phip_data>) inner_join(<phip_data>) full_join(<phip_data>) semi_join(<phip_data>) anti_join(<phip_data>): dplyr joins for phip_data